PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8311.05 Da    PI: 11.0921
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.42.4e-41976370
            S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    +a++ea+GlnPGlivllv+gg+l+vflv+n +lyv+aqknlPP+kkkPvskkklkreklkqGv+vPGe
  XP_013613779.1  9 KAAAEARGLNPGLIVLLVIGGPLVVFLVANIVLYVHAQKNLPPKKKKPVSKKKLKREKLKQGVSVPGE 76
                    7899***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.6E-361276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDREDFARKA AAEARGLNPG LIVLLVIGGP LVVFLVANIV LYVHAQKNLP PKKKKPVSKK  60
KLKREKLKQG VSVPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.10362e-71leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892695e-66AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665799.19e-47PREDICTED: DNA-binding protein S1FA1-like
RefseqXP_013613779.19e-47PREDICTED: DNA-binding protein S1FA1-like
RefseqXP_013613777.19e-47PREDICTED: DNA-binding protein S1FA1-like
SwissprotQ423379e-20S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A078H0689e-44A0A078H068_BRANA; BnaC04g27370D protein
STRINGBra039779.1-P1e-23(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769